EST-derived single nucleotide polymorphism markers for assembling genetic and physical map of the barley genome
Date
2008
Journal Title
Journal ISSN
Volume Title
Publisher
Springer
Abstract
In a panel of seven genotypes, 437 expressed
sequence tag (EST)-derived DNA fragments were sequenced. Single nucleotide polymorphisms (SNPs) that
were polymorphic between the parents of three mapping
populations were mapped by heteroduplex analysis and a
genome-wide consensus map comprising 216 EST-derived
SNPs and 4 InDel (insertion/deletion) markers was constructed. The average frequency of SNPs amounted to 1/130 bp and 1/107.8 bp for a set of randomly selected and a set
of mapped ESTs, respectively.
Description
Keywords
Molecular markers, SNPs, Haplotype diversity, Nucleotide diversity, Genetic map
Citation
Funct. Integr. Genomics, 8: 223-233