Publications of NIPGR Scientists

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Subject: search.filters.subject.Adaptive responses

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    Calcium-dependent changes in physicochemical properties and the proteome dynamics influence dehydration responses in rice
    (Elsevier B.V., 2020) Rai, Yogita; Wardhan, Vijay; Gupta, Deepti Bhushan; Chakraborty, Niranjan
    The cytosolic Ca2+ ([Ca2+]cyt), in plants serves as secondary messenger during development and stress adaptive responses. While several of the components of Ca2+-signalling, especially involved in water-deficit stress or dehydration are known, the underlying mechanism of such regulations remain poorly understood. In this study, we investigated the Ca2+-mediated alleviation of dehydration stress in rice. The physicochemical indices of the rice seedlings pretreated with CaCl2, followed by dehydration treatment displayed better maintenance of relative water content (RWC) and cell membrane integrity, besides peroxide levels. CaCl2-pretreated seedling showed stimulation of antioxidants contributing to long-term survival under dehydration stress. Contrastingly, blocking of Ca2+-channels aggravated the dehydration-induced damage, suggesting a crucial role of Ca2+-signalling in stress adaptation. The cytosolic proteome profiling of CaCl2-pretreated seedlings revealed 100 distinct proteins that include 56 dehydration-responsive proteins (DRPs), presumably involved in adaptive responses. A critical screening of the proteome led to the identification of a MADS-box transcription factor family protein, designated OsMADS23. The predicted structure and nuclear localization indicated that OsMADS23 might bind to nucleic acids, suggesting its possible role in transcriptional regulation. The stimulation of stress-responsive expression of OsMADS23 by Ca2+ demonstrated its participation in Ca2+-dependent signalling. Altogether, these results indicate the Ca2+-dependent dehydration response in plants and substantiate the function of a MADS-box protein in the cross-talk of developmental and stress-responsive pathways.
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    Physiological plasticity to high temperature stress in chickpea: Adaptive responses and variable tolerance
    (Elsevier B.V., 2019) Pareek, Akanksha; Rathi, Divya; Mishra, Divya; Chakraborty, Subhra; Chakraborty, Niranjan
    High temperature stress (HTS) is one of the most crucial factors that limits plant growth and development, and reduces crop yields worldwide. Cool-season crops, particularly the legumes, are severely affected by increasing ambient temperature associated with global climate change. We characterized the HTS-induced modulations of morpho-physicochemical traits and gene expression of several chickpea genotypes and the metabolic profile of the tolerant cultivar. Higher water use efficiency and photosynthetic capacity, minimal membrane lipid peroxidation in conjunction with increased abundance of osmolytes and secondary metabolites depicted thermotolerance of ICC 1205. The adaptive responses were accompanied by high transcript abundance of heat shock proteins and antioxidant enzymes. To integrate stress-responsive signalling and metabolic networks, the HTS-induced physicochemical analysis was further extended to metabolite profiling of the thermotolerant cultivar. The screening of the metabolome landscape led to the identification of 49 HTS-responsive metabolites that include polycarboxylic acid, sugar acids, sugar alcohols and amino acids which might confer thermotolerance in chickpea. The present study, to our knowledge, is the most comprehensive of its kind in dissecting cultivar-specific differential adaptive responses to HTS in chickpea, which might potentiate the identification of genetic traits extendible to improvement of thermotolerance of crops.
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    Dehydration-responsive alterations in the chloroplast proteome and cell metabolomic profile of rice reveals key stress adaptation responses
    (Elsevier B.V., 2019) Gayen, Dipak; Barua, Pragya; Lande, Nilesh Vikram; Varshney, Swati; Sengupta, Shantanu; Chakraborty, Subhra; Chakraborty, Niranjan
    Chloroplast is a semi-autonomous organelle in plants and other photosynthetic eukaryotes, playing a fundamental role of regulating photosynthesis. It is also responsible for sustaining essential biosynthetic reactions including synthesis of amino acids, fatty acids and terpenes. Photosynthesis, the conversion of light energy into chemical energy, serves as the sensor of environmental changes and augments different cellular functions to initiate adaptive responses. However, the molecular processes and regulatory mechanisms of dehydration tolerance adopted by chloroplast remain largely unknown. To gain a better understanding of dehydration response, a chloroplast proteome map of rice was developed. Four-week-old rice seedlings were subjected to dehydration by withholding water for 9 d, and the magnitude of dehydration-induced damage to the chloroplast was monitored. The iTRAQ-based quantitative proteome analysis led to the identification of 40 differentially regulated proteins (DRPs). The DRPs were presumably involved in a wide array of metabolic processes including chloroplast energy metabolism, photosynthesis and defense response. Furthermore, dehydration-induced changes in the metabolite profile and network analysis revealed a high abundance of branched chain amino acids and sugar that might reduce osmotic potential, thereby protecting cellular integrity. The proteomics approach revealed altered status of major photosynthesis related proteins, while cell metabolite profile demonstrated alteration of tricarboxylic acid cycle intermediates, indicating dehydration-triggered alterations in ATP production and energy metabolism. Altogether, these results demonstrated that the global regulation of chloroplast proteome is intimately linked to cellular metabolic rewiring of adaptive responses, which may favor genetic manipulation of crop species for better adaptation.