Publications of NIPGR Scientists
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Item Genome-wide identification, in-silico characterisation and expression analysis of multiprotein bridging factor 1 gene family members in rice(Springer Nature Publishing AG, 2025) Bishnoi, Alka; Ram, Hasthi; Soni, PraveenThe multiprotein bridging factor 1 (MBF1) proteins are evolutionarily conserved transcription co-factors. However, little is known about rice MBF1 gene family and its role. A genome-wide search led to the identification of two MBF1 genes in the rice genome. Their proteins contained characteristic MBF1 and helix-turn-helix domains. Phylogenetic analysis showed that they belong to two different groups. Exploration of publicly available rice transcriptome data revealed that OsMBF1b exhibits constitutively high transcript abundance in all tissues and developmental stages of rice with a little alteration in its expression. Contrarily, OsMBF1c exhibited a prominent alteration in its expression in response to environmental perturbations. Both OsMBF1s showed the highest expression in endosperm. Analysis of publicly-available rice transcriptome data also showed that both OsMBF1s have a role in response to different stresses, especially in heat. Transcript analysis using qRT-PCR confirmed heat inducibility of OsMBF1c in contrasting genotypes i.e. IR64 (heat sensitive) and Nagina 22 (heat tolerant). qRT-PCR also confirmed the drought inducibility of both genes in the IR64 genotype which is sensitive to drought stress also as revealed by analysis of different parameters. In-silico interaction study also indicated their role in heat response as a number of proteins required to cope with high temperatures were predicated to be their interacting partners. Several heat-responsive genes were found to co-express with OsMBF1s. In-silico promoter analysis revealed the occurrence of stress-responsive elements in their putative promoters. Interestingly, both OsMBF1s showed diurnal rhythmic expressions having peaks during the daytime when the temperature rises. Altogether, this study indicates an active role of OsMBF1s in thermotolerance in rice. This is the first report regarding the characterization of rice MBF1 members.Item Silicon supplementation as a promising approach to induce thermotolerance in plants: current understanding and future perspectives(Springer Nature Publishing AG, 2023) Bishnoi, Alka; Jangir, Pooja; Shekhawat, Pooja Kanwar; Ram, Hasthi; Soni, PraveenIn the current situation of climate change, heat is the foremost abiotic stress that is fueling food insecurity by reducing crop production, especially in arid regions around the globe. Therefore, ecofriendly and sustainable solutions are needed to address this challenge. Recent findings have established silicon (Si) as an important stress reliever element in plants which tremendously improves their health under different environmental constraints. Exogenous application of Si via fertigation, foliar spray, or seed priming acts as a booster for the already existing defense machinery of plants to cope with the drastic effects of heat. Si fertigation also improves soil properties including its water holding capacity which indirectly aids to improve plant health. Rhizospheric microorganisms also contribute by increasing the bioavailability of Si in soil. Thus, versatile interactions of Si with soil, plant, and microbes modulate the micro-environment of plants exposed to heat stress which help in mitigating the heat-induced damage to plant growth and fertility. In this review, we focus on the elucidation of the role of Si in heat tolerance at the molecular level. Silicon-derived improvements in various morpho-agronomic, physiological, biochemical, anatomical, and molecular parameters have been discussed in detail. Si-uptake and transport mechanism has been addressed. We have also discussed the knowledge gaps and scope of Si as a biostimulant for future-oriented sustainable agriculture.
