Publications of NIPGR Scientists

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Author: search.filters.author.Prasad, ManojSubject: search.filters.subject.Crop improvement

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    Genome sequencing efforts in minor millets: Current knowledge and emerging insights
    (Springer Nature Publishing AG, 2025) Singh, Roshan Kumar; Panchal, Anurag; Muthamilarasan, Mehanathan; Prasad, Manoj
    Small millets (or minor millets) include finger millet (Eleusine coracana), foxtail millet (Setaria italica), proso millet (Panicum miliaceum), barnyard millet (Echinochloa crus-galli), kodo millet (Paspalum scrobiculatum), little millet (Panicum sumatrense), teff (Eragrostis tef), fonio (Digitaria exilis), job’s tears (Coix lacryma-jobi), guinea millet (Brachiaria deflexa), and browntop millet (Urochloa ramosa). These millets are highly nutritious and climate-resilient but marginally cultivated for the production and consumption of particular communities. Though called “poor men’s crops,” minor millets possess the potential to ensure food and nutritional security amid the threat of global climate change. Thus, scope exists to improve the agronomic traits of these minor millets for commercial cultivation; however, lack of genomic resources remains a bottleneck to this advancement. Genome sequencing not only provides an opportunity to decode the genes encoded by the genome, but also provides avenue for the development of genomic resources. The success of genome sequencing for resource development and further implementation of these resources have been proven in other crop plants. Among minor millets, genomes of a few species have been sequenced, including finger millet, foxtail millet, proso millet, barnyard millet, teff, fonio, and job’s tears. However, the genomes of kodo millet, little millet, guinea millet, and browntop millet remains to be sequenced. In this context, the chapter summarizes the outcomes of sequencing efforts and the application of genome sequence information in accelerating genomics studies in minor millets. The chapter also enumerates the status of transcriptome sequencing and its application in dissecting the genes underlying important traits.
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    The promise of millets in the twenty-first century: emphasis on breeding, nutrition, food security and sustainability
    (Springer Nature Publishing AG, 2023) Bandyopadhyay, Tirthankar; Singh, Roshan Kumar; Ramesh, Palakurthi; Maurya, Jyoti; Prasad, Manoj
    Global population is expected to cross 11 billion by the turn of the century, which has put immense pressure on the existing agricultural systems worldwide. This is complicated by gradually decreasing productivity and acreage as a result of climate change in addition to ever-increasing input costs of resource hungry staple crops like rice, wheat, and maize. Unfortunately, the most affected by these events are those who have the least resources at their disposal to mitigate the issue, especially in countries of Asia and Sub-Saharan Africa. It is therefore pertinent to explore and adopt alternative and/or complementary crops that are easier to cultivate, climate change tolerant, less resource hungry, nutritionally richer for human consumption, and agriculturally sustainable. Millets are perfect cereal crops which meet all of these requirements and can realistically provide much-needed solutions to current global food and nutritional security challenges. In this review, we provide a bird’s eye view of the relevance of millets in global agro-ecosystems in the context of their nutritional and agronomic attributes. Furthermore, we share perspectives on the major areas of crop improvement programs worldwide and discuss major challenges confronting the same. Finally, we discourse on the scope of millets for wider acceptability and highlight major points at the interface of genetic intervention–crop management post-harvest practices worth considering to potentially facilitate robust millet-based nutritional and food security.
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    Complex molecular mechanisms determine fitness of plants to biotic and abiotic stresses
    (Springer Nature Publishing AG, 2021) Prasad, Ashish; Senthil-Kumar, Muthappa; Prasad, Manoj
    The mode of growth and development of plants does not allow them to change their habitat upon stress imposition. Through the course of evolution, plants have acquired complex molecular pathways to deal with abiotic and biotic factors to ensure their survival. The changing climatic conditions have led to unprecedented weather patterns resulting in increased crop losses. Similarly, the spread of pathogens in an era of increasing international trade has resulted in introduction and adaptation of these pathogens to new areas and cause frequent epidemics. There is an increasing need to understand the molecular mechanisms underlying stress responses in plants and envision ways to develop new crop varieties with improved features.
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    Biotechnological approaches to dissect climate-resilient traits in millets and their application in crop improvement
    (Elsevier B.V., 2021) Singh, Roshan Kumar; Muthamilarasan, Mehanathan; Prasad, Manoj
    'Small millets' is a generic term that includes all the millets except pearl millet and sorghum. These small or minor millets constitute eleven species that are marginally cultivated and consumed worldwide. These small millets possess excellent agronomic-, climate-resilient, and nutritional traits, although they lack popularity. Small millets withstand a broad spectrum of environmental stresses and possess better water-use and nitrogen-use efficiencies. Of note, small millets are five- to seven-fold nutritionally rich in terms of protein, bioactive compounds, micro- and macro-nutrients as compared to major cereals. Irrespective of these merits, small millets have received little research attention compared to major millets and cereals. However, the knowledge generated from such studies is significant for the improvement of millets per se and for translating the information to improve major cereals through breeding and transgene-based approaches. Given this, the review enumerates the efforts invested in dissecting the climate-resilient traits in small millets and provides a roadmap for deploying the information in crop improvement of millets as well as cereals in the scenario of climate change.
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    Setaria genome sequencing: an overview
    (Springer, 2013) Lata, Charu; Prasad, Manoj
    The genus Setaria includes two important C4 Panicoid grass species, namely S. italica (cultivated) and S. viridis (weed; wild ancestor), which together represent an appropriate model system for architectural, physiological, evolutionary, and genomic studies in related grasses. It is a diploid, inbreeder, self-fertile annual cereal grass having short life cycle and minimal growth requirements. There close relatedness to biofuel crops like switch grass and napier grass further signifies their importance. Further, foxtail millet is an important food and fodder grain crop grown in arid and semi-arid regions in many parts of the world. Therefore, an increasing interest in these species has led to a gradual accumulation and development of genomic data and genetic resources. Setaria genome sequencing is an outcome of such endeavors. These sequencing efforts uncovered several distinctive attributes of Setaria genome that may help in understanding its physiology, evolution and adaptation. This will not only aid in comparative genomics studies of Setaria and related crops including bioenergy grasses but also help in rapid advancements of genomics information for developing varieties with superior traits either through marker-assisted selection (MAS) or using transgenic approaches in these crops.